Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BMY_0688 | BMY_0689 | BMY_0688 | BMY_0689 | Sigma-54-dependent Fis family transcriptional regulator. | Two-component sensor histidine kinase. | 0.981 |
BMY_0688 | BMY_1122 | BMY_0688 | BMY_1122 | Sigma-54-dependent Fis family transcriptional regulator. | Hypothetical protein. | 0.888 |
BMY_0688 | BMY_1175 | BMY_0688 | BMY_1175 | Sigma-54-dependent Fis family transcriptional regulator. | Propionate catabolism operon regulatory protein PrpR. | 0.521 |
BMY_0688 | BMY_1781 | BMY_0688 | BMY_1781 | Sigma-54-dependent Fis family transcriptional regulator. | Two-component sensor histidine kinase. | 0.432 |
BMY_0688 | BMY_1783 | BMY_0688 | BMY_1783 | Sigma-54-dependent Fis family transcriptional regulator. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.868 |
BMY_0689 | BMY_0688 | BMY_0689 | BMY_0688 | Two-component sensor histidine kinase. | Sigma-54-dependent Fis family transcriptional regulator. | 0.981 |
BMY_0689 | BMY_1122 | BMY_0689 | BMY_1122 | Two-component sensor histidine kinase. | Hypothetical protein. | 0.874 |
BMY_0689 | BMY_1175 | BMY_0689 | BMY_1175 | Two-component sensor histidine kinase. | Propionate catabolism operon regulatory protein PrpR. | 0.713 |
BMY_0689 | BMY_1692 | BMY_0689 | BMY_1692 | Two-component sensor histidine kinase. | Nitrogen assimilation regulatory protein NtrX. | 0.937 |
BMY_0689 | BMY_1781 | BMY_0689 | BMY_1781 | Two-component sensor histidine kinase. | Two-component sensor histidine kinase. | 0.611 |
BMY_0689 | BMY_1783 | BMY_0689 | BMY_1783 | Two-component sensor histidine kinase. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.768 |
BMY_1122 | BMY_0688 | BMY_1122 | BMY_0688 | Hypothetical protein. | Sigma-54-dependent Fis family transcriptional regulator. | 0.888 |
BMY_1122 | BMY_0689 | BMY_1122 | BMY_0689 | Hypothetical protein. | Two-component sensor histidine kinase. | 0.874 |
BMY_1122 | BMY_1175 | BMY_1122 | BMY_1175 | Hypothetical protein. | Propionate catabolism operon regulatory protein PrpR. | 0.827 |
BMY_1122 | BMY_1692 | BMY_1122 | BMY_1692 | Hypothetical protein. | Nitrogen assimilation regulatory protein NtrX. | 0.915 |
BMY_1122 | BMY_1781 | BMY_1122 | BMY_1781 | Hypothetical protein. | Two-component sensor histidine kinase. | 0.933 |
BMY_1122 | BMY_1783 | BMY_1122 | BMY_1783 | Hypothetical protein. | RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.853 |
BMY_1122 | rpoZ | BMY_1122 | BMY_1124 | Hypothetical protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.773 |
BMY_1175 | BMY_0688 | BMY_1175 | BMY_0688 | Propionate catabolism operon regulatory protein PrpR. | Sigma-54-dependent Fis family transcriptional regulator. | 0.521 |
BMY_1175 | BMY_0689 | BMY_1175 | BMY_0689 | Propionate catabolism operon regulatory protein PrpR. | Two-component sensor histidine kinase. | 0.713 |
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