BDP_0008 protein (Bifidobacterium dentium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BDP_0008

Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (448 aa)

Predicted Functional Partners:

BDP_1078

0.987

glnA1

0.948

glnA2

0.944

BDP_1079

0.930

argJ

0.930

gadB

0.917

guaC

0.912

BDP_0294

0.907

aspC

0.907

BDP_1143

0.907

Your Current Organism:

Bifidobacterium dentium

NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDP_0008	BDP_0294	BDP_0008	BDP_0294	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Aminotransferase.	0.907
BDP_0008	BDP_1078	BDP_0008	BDP_1078	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamate synthase [NADPH] large subunit.	0.987
BDP_0008	BDP_1079	BDP_0008	BDP_1079	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamate synthase [NADPH] small subunit.	0.930
BDP_0008	BDP_1143	BDP_0008	BDP_1143	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Aminotransferase.	0.907
BDP_0008	argJ	BDP_0008	BDP_1295	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	argJ Glutamate N-acetyltransferase/Amino-acid acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.	0.930
BDP_0008	aspC	BDP_0008	BDP_0349	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	aspC Aspartate aminotransferase.	0.907
BDP_0008	gadB	BDP_0008	BDP_1749	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	GadB glutamate decarboxylase; Belongs to the group II decarboxylase family.	0.917
BDP_0008	glnA1	BDP_0008	BDP_1308	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	glnA1 Glutamine synthetase.	0.948
BDP_0008	glnA2	BDP_0008	BDP_1564	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	glnA2 Glutamine synthetase.	0.944
BDP_0008	guaC	BDP_0008	BDP_1206	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	guaC GMP reductase,fadD1 Long-chain-fatty-acid--CoA ligase.	0.912
BDP_0294	BDP_0008	BDP_0294	BDP_0008	Aminotransferase.	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.907
BDP_0294	BDP_1078	BDP_0294	BDP_1078	Aminotransferase.	Glutamate synthase [NADPH] large subunit.	0.940
BDP_0294	BDP_1079	BDP_0294	BDP_1079	Aminotransferase.	Glutamate synthase [NADPH] small subunit.	0.907
BDP_0294	BDP_1143	BDP_0294	BDP_1143	Aminotransferase.	Aminotransferase.	0.906
BDP_0294	argJ	BDP_0294	BDP_1295	Aminotransferase.	argJ Glutamate N-acetyltransferase/Amino-acid acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.	0.904
BDP_0294	aspC	BDP_0294	BDP_0349	Aminotransferase.	aspC Aspartate aminotransferase.	0.913
BDP_0294	gadB	BDP_0294	BDP_1749	Aminotransferase.	GadB glutamate decarboxylase; Belongs to the group II decarboxylase family.	0.817
BDP_1078	BDP_0008	BDP_1078	BDP_0008	Glutamate synthase [NADPH] large subunit.	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.987
BDP_1078	BDP_0294	BDP_1078	BDP_0294	Glutamate synthase [NADPH] large subunit.	Aminotransferase.	0.940
BDP_1078	BDP_1079	BDP_1078	BDP_1079	Glutamate synthase [NADPH] large subunit.	Glutamate synthase [NADPH] small subunit.	0.999