STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0010Hypothetical membrane spanning protein, H+/gluconate symporter. (441 aa)    
Predicted Functional Partners:
BDP_0011
Sugar isomerase/epimerase.
 
     0.908
BDP_0013
Sugar decarboxylase or lyase/synthase.
 
     0.850
BDP_0014
Sugar isomerase or sugar amino transferase.
 
     0.848
BDP_0012
Sugar kinase.
 
     0.833
BDP_0694
Conserved hypothetical protein.
  
     0.621
BDP_0009
LacI-type transcriptional regulator.
 
     0.604
fabG-5
fabG 3-oxoacyl-[acyl-carrier protein] reductase.
  
  
 0.539
BDP_2090
Melibiose carrier protein.
  
     0.455
BDP_1227
Conserved hypothetical protein.
  
     0.429
BDP_0073
TetR-type transcriptional regulator.
  
     0.411
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.