STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0011Sugar isomerase/epimerase. (251 aa)    
Predicted Functional Partners:
BDP_0012
Sugar kinase.
  
 0.967
BDP_0010
Hypothetical membrane spanning protein, H+/gluconate symporter.
 
     0.908
BDP_0013
Sugar decarboxylase or lyase/synthase.
 
    0.876
BDP_0014
Sugar isomerase or sugar amino transferase.
 
    0.863
BDP_1659
NAD-dependent oxidoreductase.
  
  
 0.700
BDP_1716
NAD-dependent oxidoreductase.
  
  
 0.700
BDP_0009
LacI-type transcriptional regulator.
 
    0.526
BDP_1534
Fructokinase.
  
  
 0.499
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
  
 0.499
fabG-5
fabG 3-oxoacyl-[acyl-carrier protein] reductase.
 
  
 0.484
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.