Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BDP_0014Sugar isomerase or sugar amino transferase. (183 aa)    
Predicted Functional Partners:
BDP_0013
Sugar decarboxylase or lyase/synthase.
 
 
 0.999
gpi
Gpi Glucose-6-phosphate isomerase; Belongs to the GPI family.
    
 0.911
tkt
Transketolase; Belongs to the transketolase family.
    
 0.911
BDP_0012
Sugar kinase.
 
    0.873
BDP_0011
Sugar isomerase/epimerase.
 
    0.863
BDP_0010
Hypothetical membrane spanning protein, H+/gluconate symporter.
 
     0.849
BDP_1078
Glutamate synthase [NADPH] large subunit.
     
 0.591
ptsG
ptsG PTS system, glucose-specific IIABC component.
  
  
 0.426
BDP_1930
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1(PTS system).
  
  
 0.426
mscL
Large-conductance mechanosensitive channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
       0.406
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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