STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0027Conserved hypothetical protein. (124 aa)    
Predicted Functional Partners:
BDP_0026
tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.768
BDP_0379
Narrowly conserved hypothetical protein.
  
     0.680
BDP_1401
Putative DNA binding protein.
  
     0.621
BDP_1814
Conserved hypothetical secreted protein with G5 domain.
  
     0.587
BDP_2262
Hypothetical secreted protein.
  
     0.585
BDP_1170
Conserved hypothetical protein.
  
     0.526
BDP_0212
Hypothetical membrane-spanning protein, pilus assembly protein.
  
     0.525
BDP_0356
Conserved hypothetical membrane spanning protein.
  
     0.508
pyrE-2
Orotate phosphoribosyltransferase PyrE.
  
     0.500
BDP_1331
Narrowly conserved hypothetical protein.
  
     0.482
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.