Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0042Phosphoprotein phosphatase. (529 aa)    
Predicted Functional Partners:
BDP_0038
Serine-threonine protein kinase.
 
 
 0.994
BDP_0039
Serine-threonine protein kinase.
 
 
 0.972
BDP_0043
FHA domain containing protein.
 
 
 0.939
BDP_0044
Conserved hypothetical protein.
 
 
 0.927
BDP_0040
Penicillin-binding protein transpeptidase.
  
  
 0.869
BDP_0041
Cell division protein; Belongs to the SEDS family.
 
  
 0.862
pknA2
pknA2 Serine/threonine protein kinase.
 
 
 0.860
BDP_2260
Serine/threonine protein kinase.
 
 
 0.857
BDP_1772
Serine/threonine protein kinase.
 
 
 0.856
BDP_1155
Hypothetical protein.
 
 
 0.695
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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