STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0043FHA domain containing protein. (175 aa)    
Predicted Functional Partners:
BDP_0038
Serine-threonine protein kinase.
 
 
 
 0.991
BDP_0044
Conserved hypothetical protein.
 
   
 0.966
BDP_0042
Phosphoprotein phosphatase.
 
 
 0.939
BDP_0039
Serine-threonine protein kinase.
 
 
 
 0.936
BDP_0040
Penicillin-binding protein transpeptidase.
 
   
 0.924
BDP_0041
Cell division protein; Belongs to the SEDS family.
 
   
 0.915
BDP_1155
Hypothetical protein.
  
     0.766
pknA2
pknA2 Serine/threonine protein kinase.
 
 
 
 0.750
prpC
Protein phosphatase PrpC.
 
 
 0.715
BDP_1772
Serine/threonine protein kinase.
 
 
 
 0.676
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.