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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0045Dipeptidyl peptidase IV. (828 aa)    
Predicted Functional Partners:
pldB
Lysophospholipase PldB.
 
   
 0.656
BDP_1572
Serine protease.
  
  
 0.585
ptsG
ptsG PTS system, glucose-specific IIABC component.
    
 
 0.545
BDP_1930
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1(PTS system).
    
 
 0.545
BDP_2143
Putative PucR-like transcriptional regulator.
  
     0.542
BDP_1699
Endonuclease/CDSuclease/phosphatase.
 
     0.515
BDP_0043
FHA domain containing protein.
 
    0.493
pip1
Hypothetical membrane spanning protein Pip.
       0.463
BDP_0048
Hypothetical membrane protein pip.
       0.463
BDP_0313
Conserved hypothetical membrane spanning protein.
 
     0.460
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.