Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0045Dipeptidyl peptidase IV. (828 aa)    
Predicted Functional Partners:
pldB
Lysophospholipase PldB.
 
   
 0.623
BDP_1572
Serine protease.
  
  
 0.579
BDP_2143
Putative PucR-like transcriptional regulator.
  
     0.542
BDP_1699
Endonuclease/CDSuclease/phosphatase.
 
     0.515
BDP_0043
FHA domain containing protein.
 
     0.475
BDP_0048
Hypothetical membrane protein pip.
       0.461
pip1
Hypothetical membrane spanning protein Pip.
       0.460
BDP_0313
Conserved hypothetical membrane spanning protein.
 
     0.460
BDP_0044
Conserved hypothetical protein.
       0.433
BDP_0186
TetR-type transcriptional regulator.
  
     0.428
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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