STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pip1Hypothetical membrane spanning protein Pip. (825 aa)    
Predicted Functional Partners:
BDP_0048
Hypothetical membrane protein pip.
 
    
0.829
pldB
Lysophospholipase PldB.
  
    0.582
BDP_0069
Hypothetical membrane protein.
  
     0.493
BDP_1439
ABC-type multidrug transport system permease.
 
    0.472
BDP_0045
Dipeptidyl peptidase IV.
       0.460
BDP_1440
ABC-2 type transporter.
 
    0.444
BDP_0224
Hypothetical membrane-spanning protein.
  
     0.437
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.