STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pldBLysophospholipase PldB. (354 aa)    
Predicted Functional Partners:
aroG2-2
aroG2 3-deoxy-7-phosphoheptulonate synthase, Phe-sensitive.
  
   0.681
nmrA
NmrA-like protein.
  
   0.681
BDP_0045
Dipeptidyl peptidase IV.
 
   
 0.656
BDP_0048
Hypothetical membrane protein pip.
       0.603
pip1
Hypothetical membrane spanning protein Pip.
       0.601
tesB
tesB Acyl-CoA thioesterase.
  
     0.589
BDP_0040
Penicillin-binding protein transpeptidase.
   
   0.565
BDP_0044
Conserved hypothetical protein.
     
 0.535
BDP_0043
FHA domain containing protein.
     
 0.513
BDP_1331
Narrowly conserved hypothetical protein.
 
   0.504
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.