STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0050Aminotransferase. (402 aa)    
Predicted Functional Partners:
metB-2
metB Cystathionine gamma-synthase.
 
 
 0.934
metC1
metC1 Cystathionine beta-lyase.
 
 
 0.931
BDP_0671
Cystathionine gamma-synthase.
 
 
 0.928
cysK
cysK cysteine synthase.
    
 0.927
BDP_0294
Aminotransferase.
 
  
 0.920
metY
metY O-acetylhomoserine aminocarboxypropyltransferase.
   
 0.913
metY-2
MetY O-acetylhomoserine aminocarboxypropyltransferase.
   
 0.912
aspC
aspC Aspartate aminotransferase.
 
  
0.910
metE
5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
    
 0.903
BDP_1111
Methionine synthase vitamin-B12 independent protein.
    
 0.903
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.