Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BDP_0062ferredoxin/ferredoxin-NADP reductase. (484 aa)    
Predicted Functional Partners:
BDP_1078
Glutamate synthase [NADPH] large subunit.
 
 
 0.999
guaC
guaC GMP reductase,fadD1 Long-chain-fatty-acid--CoA ligase.
  
 
 0.867
fdxC
fdxC Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
 
 
 
 0.776
BDP_1094
Dihydroorotate dehydrogenase electron transfer subunit.
   
 
 0.695
metY
metY O-acetylhomoserine aminocarboxypropyltransferase.
  
    0.587
metY-2
MetY O-acetylhomoserine aminocarboxypropyltransferase.
  
    0.587
BDP_1485
ABC-type Mn2+/Zn2+ transport systems, permease components.
 
     0.582
BDP_0063
Conserved hypothetical protein.
       0.549
BDP_0061
Hypothetical membrane spanning protein.
       0.508
htpX
Zn-dependent protease; Belongs to the peptidase M48B family.
       0.477
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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