Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0083Xre-type transcriptional regulator. (408 aa)    
Predicted Functional Partners:
hipA
HipA protein.
   
 
 0.862
BDP_0977
Conserved hypothetical protein.
 
 
 
 0.839
BDP_0181
Hypothetical membrane-spanning protein.
  
     0.726
BDP_0084
Permease of the DMT superfamily.
  
  
 0.522
BDP_0997
Restriction endonuclease.
  
     0.517
BDP_0293
Transcriptional regulator, TetR family.
  
   
 0.489
BDP_0291
Putative transporter.
  
     0.451
BDP_1287
Transporter.
  
     0.446
BDP_2000
Conserved hypothetical protein containing a von Willebrand factor type A (vWA) domain.
 
   
 0.416
BDP_1439
ABC-type multidrug transport system permease.
 
   
 0.411
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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