STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pxpALamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. (291 aa)    
Predicted Functional Partners:
BDP_0106
Urea amidolyase related protein.
  
 0.999
gshA
gshA Glutamate--cysteine ligase; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily.
     
  0.900
BDP_0104
Conserved hypothetical protein; Belongs to the D-glutamate cyclase family.
  
    0.894
BDP_0107
Biotin-dependent acyl-CoA carboxylase.
  
    0.861
glnA1
glnA1 Glutamine synthetase.
   
 
  0.806
glnA2
glnA2 Glutamine synthetase.
   
 
  0.806
BDP_0008
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
    
  0.804
BDP_1078
Glutamate synthase [NADPH] large subunit.
     
  0.800
BDP_1079
Glutamate synthase [NADPH] small subunit.
     
  0.800
gadB
GadB glutamate decarboxylase; Belongs to the group II decarboxylase family.
     
  0.800
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.