STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0112Sugar ABC uptake system, solute-binding protein. (429 aa)    
Predicted Functional Partners:
BDP_0114
Sugar ABC uptake system, permease component.
 
 
 0.946
BDP_0113
Sugar ABC transport system, permease component.
 
   0.945
BDP_2205
Permease protein of ABC transporter system for sugars.
 
   0.844
BDP_2204
Permease protein of ABC transporter system for sugars.
 
 
 0.842
BDP_2224
Raffinose transport system permease protein.
 
 
 0.759
BDP_2225
Raffinose transport system permease protein.
 
   0.647
BDP_2226
Raffinose-binding protein.
  
     0.594
BDP_2238
ATP-binding protein of ABC transporter system for sugars; Belongs to the ABC transporter superfamily.
  
 
 0.593
BDP_0491
ABC transporter system, sugar permease.
 
 
 0.519
BDP_0110
Hypothetical membrane-spanning protein.
 
  
 0.514
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.