STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0113Sugar ABC transport system, permease component. (292 aa)    
Predicted Functional Partners:
BDP_0114
Sugar ABC uptake system, permease component.
 
 
 0.973
BDP_0112
Sugar ABC uptake system, solute-binding protein.
 
   0.945
BDP_2238
ATP-binding protein of ABC transporter system for sugars; Belongs to the ABC transporter superfamily.
 
 
 0.869
BDP_2224
Raffinose transport system permease protein.
 
 
 0.857
BDP_2207
Solute binding protein of ABC transporter system for sugars.
 
   0.832
BDP_0491
ABC transporter system, sugar permease.
 
 
 0.820
BDP_2172
Permease protein of ABC transporter system for sugars.
 
 
 0.810
BDP_1704
Sugar-binding protein of ABC transporter system, permease.
 
 
 0.716
BDP_0127
ABC-type sugar transport system, permease component.
 
 
 0.682
BDP_0567
Sugar-binding protein of ABC transporter system, permease.
 
 
 0.681
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.