STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0114Sugar ABC uptake system, permease component. (285 aa)    
Predicted Functional Partners:
BDP_0113
Sugar ABC transport system, permease component.
 
 0.981
BDP_0112
Sugar ABC uptake system, solute-binding protein.
 
 
 0.960
BDP_2238
ATP-binding protein of ABC transporter system for sugars; Belongs to the ABC transporter superfamily.
 
 0.954
BDP_2205
Permease protein of ABC transporter system for sugars.
 
 
 0.878
BDP_2225
Raffinose transport system permease protein.
 
 
 0.873
BDP_2173
Permease protein of ABC transporter system for sugars.
 
 0.854
BDP_2207
Solute binding protein of ABC transporter system for sugars.
 
 
 0.854
BDP_0489
Sugar-binding protein of ABC transporter system.
 
 
 0.832
BDP_1705
Permease protein of ABC transporter system for sugars.
   0.788
BDP_2184
Sugar-binding protein of ABC transporter system.
 
 0.766
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.