STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0122Sialic acidspecific 9-O-acetylesterase. (600 aa)    
Predicted Functional Partners:
BDP_2152
Alpha-L-fucosidase.
 
     0.646
gpc
Gcp O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
     
 0.630
BDP_2129
Xylan esterase.
 
   
 0.545
BDP_2126
Mannosidase; Belongs to the glycosyl hydrolase 26 family.
 
   
 0.498
BDP_1427
Mannan endo-1,4-beta-mannosidase precursor; Belongs to the glycosyl hydrolase 26 family.
 
   
 0.426
BDP_0121
Transposase.
       0.410
lacZ6
LacZ6 Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
  
     0.406
BDP_0120
Transposase.
       0.401
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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