STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0125ABC transport system, sugar-binding component. (458 aa)    
Predicted Functional Partners:
BDP_0126
ABC-type sugar transport system, permease component.
 
 
 0.938
BDP_2174
Solute binding protein of ABC transporter system.
  
  
  0.936
BDP_0127
ABC-type sugar transport system, permease component.
 
 
 0.932
BDP_0488
Sugar-binding lipoprotein of ABC transporter system.
  
  
  0.925
BDP_0112
Sugar ABC uptake system, solute-binding protein.
  
  
  0.912
BDP_2207
Solute binding protein of ABC transporter system for sugars.
  
  
  0.911
BDP_0565
Solute-binding protein of ABC transporter system(lactose).
  
  
 
0.906
BDP_2226
Raffinose-binding protein.
  
  
 
0.906
BDP_2161
Solute binding protein of ABC transporter system for sugars.
    
 0.903
BDP_0123
Acetyl esterase.
  
     0.720
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.