STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0125ABC transport system, sugar-binding component. (458 aa)    
Predicted Functional Partners:
BDP_0126
ABC-type sugar transport system, permease component.
 
 
 0.927
BDP_0127
ABC-type sugar transport system, permease component.
 
 
 0.922
BDP_0123
Acetyl esterase.
  
     0.720
BDP_2238
ATP-binding protein of ABC transporter system for sugars; Belongs to the ABC transporter superfamily.
  
 
 0.586
BDP_0132
Conserved hypothetical protein.
 
    0.527
BDP_1427
Mannan endo-1,4-beta-mannosidase precursor; Belongs to the glycosyl hydrolase 26 family.
  
     0.515
BDP_2155
Sugar ABC transporter, permease protein.
 
 
 0.491
BDP_2127
Cellobiose phosphorylase.
 
   
 0.477
malC
MalC Maltodextrin transport system permease protein.
 
   0.418
BDP_2184
Sugar-binding protein of ABC transporter system.
  
 
 0.406
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.