Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
BDP_0127ABC-type sugar transport system, permease component. (296 aa)    
Predicted Functional Partners:
BDP_0126
ABC-type sugar transport system, permease component.
 
 
 0.974
BDP_0137
ABC-type sugar transort system, sugar-binding component.
  
 0.934
BDP_0125
ABC transport system, sugar-binding component.
 
 
 0.922
BDP_0139
ABC-type sugar transport system, permease component.
  
  
 
0.920
BDP_2173
Permease protein of ABC transporter system for sugars.
 
 
 0.837
BDP_1705
Permease protein of ABC transporter system for sugars.
 
   0.818
BDP_2184
Sugar-binding protein of ABC transporter system.
 
 
 0.810
BDP_0489
Sugar-binding protein of ABC transporter system.
 
   0.792
BDP_2238
ATP-binding protein of ABC transporter system for sugars; Belongs to the ABC transporter superfamily.
 
 
 0.785
BDP_0566
Permease protein of ABC transporter system for sugars.
 
 
 0.759
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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