STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0128Mannosidase. (903 aa)    
Predicted Functional Partners:
lacZ5
lacZ5 Beta-galactosidase.
 
 
 0.735
BDP_2148
Cellulase.
 
  
 0.703
BDP_0129
LacI-type transcriptional regulator.
 
     0.693
BDP_2152
Alpha-L-fucosidase.
 
   
 0.693
BDP_2147
Endoglucanase family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.690
BDP_1535
Twin-arginine translocation pathway signal.
 
   
 0.683
BDP_1029
Pullulanase.
   
  
 0.650
fosC
FosC Beta-fructofuranosidase; Belongs to the glycosyl hydrolase 32 family.
   
  
 0.642
BDP_2170
Sucrose-6-phosphate hydrolase; Belongs to the glycosyl hydrolase 32 family.
   
  
 0.642
apuB
ApuB Amylopullulanase; Belongs to the glycosyl hydrolase 13 family.
      
 0.631
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.