STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0129LacI-type transcriptional regulator. (344 aa)    
Predicted Functional Partners:
BDP_0953
Transcriptional regulator.
  
     0.772
BDP_1686
Transcriptional regulator, LacI family.
  
     0.754
BDP_0128
Mannosidase.
 
     0.693
BDP_0952
Extracellular solute-binding protein.
 
   
 0.685
galE
galE UDP-glucose 4-epimerase.
  
 
 0.683
fosC
FosC Beta-fructofuranosidase; Belongs to the glycosyl hydrolase 32 family.
  
  
 0.637
aga
Aga Alpha-galactosidase.
  
  
 0.625
aga-2
Aga Alpha-galactosidase.
  
  
 0.625
BDP_0278
Sortase-like protein.
      
 0.618
BDP_1874
Putative fimbrial associated sortase-like protein.
      
 0.618
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.