STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0131Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 43 family. (338 aa)    
Predicted Functional Partners:
BDP_2094
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 43 family.
 
     0.975
BDP_0243
Endo-1,4-beta-xylanase.
 
   
 0.973
BDP_2091
Alpha-arabinofuranosidase I.
 
  
 0.759
BDP_2092
Alpha-galactosidase.
     0.755
BDP_2147
Endoglucanase family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
   
 0.726
BDP_2126
Mannosidase; Belongs to the glycosyl hydrolase 26 family.
  
   
 0.631
BDP_0236
Beta-xylosidase or endo-arabinase; Belongs to the glycosyl hydrolase 43 family.
  
     0.590
lacZ3
LacZ3 Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
     0.580
BDP_2148
Cellulase.
 
   
 0.573
BDP_0237
Beta-xylosidase or endo-arabinofuranosidase.
 
   
 0.511
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.