Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0143Fimbriae protein with LPXTG motif and von Willebrand factor typeA domain. (1256 aa)    
Predicted Functional Partners:
BDP_0144
Fimbrial subunit.
 
     0.578
BDP_0199
GLXTG motif protein.
 
     0.541
BDP_0142
Sortase.
 
   
 0.533
BDP_1572
Serine protease.
 
 
 0.492
BDP_0293
Transcriptional regulator, TetR family.
  
    0.488
BDP_0141
Hypothetical protein.
 
     0.469
BDP_1876
LPXTG cell wall surface protein, collagen binding domain.
 
     0.455
BDP_0181
Hypothetical membrane-spanning protein.
  
     0.443
BDP_1699
Endonuclease/CDSuclease/phosphatase.
  
     0.423
BDP_0145
Hypothetical protein.
 
     0.405
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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