Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0152MarR-type transcriptional regulator. (166 aa)    
Predicted Functional Partners:
BDP_0144
Fimbrial subunit.
  
     0.721
BDP_0153
ABC-type transporter, permease component.
 
  
 0.657
crcB
crcB-like protein, campher resistance; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
  
     0.622
BDP_0154
ABC-type transporter, permease component.
  
  
 0.611
BDP_0293
Transcriptional regulator, TetR family.
  
   
 0.608
BDP_0151
Oxidoreductase in aldo-keto reductase family.
  
  
 0.583
BDP_1878
Solute binding protein of ABC transporter system, YodA-like protein.
  
  
 0.517
BDP_0181
Hypothetical membrane-spanning protein.
  
     0.502
BDP_1124
Membrane protein.
  
    0.493
BDP_2066
Conserved hypothetical membrane spanning protein.
  
     0.490
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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