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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0161alpha-L-rhamnosidase. (890 aa)    
Predicted Functional Partners:
lacZ3
LacZ3 Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.805
BDP_0159
MFS-family sugar transporter.
 
    0.705
BDP_0222
Glycoside hydrolase family 2; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.685
glgC
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
   
  
 0.673
lacZ6
LacZ6 Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.672
BDP_2163
Conserved hypothetical protein.
  
     0.648
fabG-3
fabG 3-oxoacyl-[acyl-carrier protein] reductase.
   
 
 0.631
fabG-4
fabG 3-oxoacyl-[acyl-carrier protein] reductase.
   
 
 0.631
fabG-5
fabG 3-oxoacyl-[acyl-carrier protein] reductase.
   
 
 0.631
sdr
Short chain dehydrogenase.
   
 
 0.631
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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