Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BDP_0174ABC-type sugar transporter, sugar-binding component. (315 aa)    
Predicted Functional Partners:
BDP_0173
ABC-type sugar transporter permease component; Belongs to the binding-protein-dependent transport system permease family.
 0.998
rbsC1-3
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
 0.988
BDP_0172
ABC-type sugar transporter, ATPase component.
 
 0.980
BDP_0175
Sugar mutarotase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.965
rbsA1-3
Ribose transport ATP-binding protein RbsA.
 
 0.953
rbsB1
D-ribose-binding protein RbsB.
  
  
 
0.922
rbsA2
Ribose transport ATP-binding protein RbsA.
 
 
 0.735
rbsA1
rbsA1 Ribose transport ATP-binding protein rbsA.
  
 
 0.523
rbsA1-2
Ribose transport ATP-binding protein RbsA.
  
 
 0.523
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.470
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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