STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0186TetR-type transcriptional regulator. (251 aa)    
Predicted Functional Partners:
ftsY
FtsY signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
       0.654
BDP_0185
Glycosyltransferase.
       0.651
BDP_1621
Conserved hypothetical protein.
  
     0.614
BDP_1180
Branched-chain amino acid transport ATP-binding protein.
  
     0.489
BDP_0778
Conserved hypothetical protein.
  
     0.482
glnD
Protein PII uridylyltransferase.
 
   
 0.458
BDP_0752
Proteasome-associated protein.
  
     0.438
BDP_2006
Conserved hypothetical membrane spanning protein.
  
     0.430
BDP_0045
Dipeptidyl peptidase IV.
  
     0.428
amtP
Ammonium ion transporter.
  
  
 0.415
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.