Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BDP_0186TetR-type transcriptional regulator. (251 aa)    
Predicted Functional Partners:
ftsY
FtsY signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
       0.616
BDP_1621
Conserved hypothetical protein.
  
     0.614
BDP_0185
Glycosyltransferase.
       0.612
BDP_1180
Branched-chain amino acid transport ATP-binding protein.
  
     0.489
BDP_0778
Conserved hypothetical protein.
  
     0.482
glnD
Protein PII uridylyltransferase.
 
   
 0.451
BDP_0752
Proteasome-associated protein.
  
     0.438
BDP_2006
Conserved hypothetical membrane spanning protein.
  
     0.430
BDP_0045
Dipeptidyl peptidase IV.
  
     0.428
BDP_1179
Capsular polysaccharide biosynthesis protein.
  
     0.406
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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