STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0199GLXTG motif protein. (783 aa)    
Predicted Functional Partners:
BDP_0198
Cna protein B-type domain protein, collagen-binding protein.
 
     0.892
BDP_1748
DNA polymerase III.
  
     0.670
BDP_2000
Conserved hypothetical protein containing a von Willebrand factor type A (vWA) domain.
     0.658
BDP_1876
LPXTG cell wall surface protein, collagen binding domain.
  
     0.623
dnaQ-3
DnaQ DNA polymerase III alpha subunit.
  
     0.616
BDP_0181
Hypothetical membrane-spanning protein.
  
     0.554
BDP_0143
Fimbriae protein with LPXTG motif and von Willebrand factor typeA domain.
     0.541
BDP_0259
Hypothetical membrane-spanning protein.
  
     0.541
BDP_1831
Conserved hypothetical protein.
  
     0.539
BDP_0197
Sortase.
 
     0.491
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.