STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0201Phosphodiesterase. (354 aa)    
Predicted Functional Partners:
BDP_1167
MIP family channel protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
 
 0.487
BDP_2007
Glycerol uptake facilitator-like protein in Mip family; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
 
 0.487
BDP_1150
Conserved hypothetical protein.
  
 
 0.472
BDP_0293
Transcriptional regulator, TetR family.
  
   
 0.447
BDP_0196
ABC1 family protein kinase.
       0.446
adh2
Adh2 Aldehyde-alcohol dehydrogenase 2; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.444
BDP_0179
Possible adhesin.
    
   0.443
BDP_0403
Ribosomal-protein-S5-alanine acetyltransferase.
  
     0.432
BDP_1779
FHA domain-containing protein.
  
    0.410
pstA
pstA Phosphate transport system permease protein.
  
  
 0.405
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.