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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0210ATPase for chromosome partitioning. (318 aa)    
Predicted Functional Partners:
BDP_0212
Hypothetical membrane-spanning protein, pilus assembly protein.
 
     0.920
BDP_0211
Pilus assembly protein, type II/IV secretion system.
     
 0.857
BDP_0213
Type II secretion system protein, pilus assembly.
 
     0.793
parB
Chromosome partitioning protein ParB; Belongs to the ParB family.
  
 
 0.710
BDP_0778
Conserved hypothetical protein.
  
     0.680
BDP_0214
Conserved hypothetical protein.
       0.626
BDP_0216
Conserved hypothetical protein.
 
     0.626
glnD
Protein PII uridylyltransferase.
  
     0.537
BDP_0379
Narrowly conserved hypothetical protein.
  
     0.531
BDP_1764
MFS superfamily transporter.
  
     0.523
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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