Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0211Pilus assembly protein, type II/IV secretion system. (329 aa)    
Predicted Functional Partners:
BDP_0212
Hypothetical membrane-spanning protein, pilus assembly protein.
  
 
 0.992
BDP_0213
Type II secretion system protein, pilus assembly.
  
 
 0.988
BDP_0210
ATPase for chromosome partitioning.
       0.822
BDP_0214
Conserved hypothetical protein.
     
 0.722
BDP_0215
Conserved hypothetical protein, TadE-like family protein.
       0.587
BDP_0216
Conserved hypothetical protein.
     
 0.540
BDP_0400
Hypothetical protein.
  
  
 0.508
BDP_0208
Beta-glucosidase.
       0.412
BDP_0209
Sugar transporter.
       0.412
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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