STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0214Conserved hypothetical protein. (95 aa)    
Predicted Functional Partners:
BDP_0215
Conserved hypothetical protein, TadE-like family protein.
     
 0.827
BDP_0211
Pilus assembly protein, type II/IV secretion system.
     
 0.722
BDP_0213
Type II secretion system protein, pilus assembly.
 
   
 0.721
BDP_0216
Conserved hypothetical protein.
     
 0.683
BDP_0212
Hypothetical membrane-spanning protein, pilus assembly protein.
     
 0.637
BDP_0210
ATPase for chromosome partitioning.
       0.582
BDP_1937
Conserved hypothetical protein.
  
     0.578
BDP_0217
Diacylglycerol kinase.
       0.574
BDP_0398
DNA and RNA helicase related protein.
  
     0.532
BDP_1422
Conserved hypothetical protein.
  
     0.510
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.