STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0216Conserved hypothetical protein. (118 aa)    
Predicted Functional Partners:
BDP_0214
Conserved hypothetical protein.
     
 0.737
BDP_0215
Conserved hypothetical protein, TadE-like family protein.
     
 0.712
BDP_0217
Diacylglycerol kinase.
       0.698
BDP_0210
ATPase for chromosome partitioning.
 
     0.626
BDP_0213
Type II secretion system protein, pilus assembly.
     
 0.613
BDP_0211
Pilus assembly protein, type II/IV secretion system.
     
 0.600
BDP_1589
Chromosome segregation ATPase.
  
     0.599
BDP_0212
Hypothetical membrane-spanning protein, pilus assembly protein.
     
 0.584
BDP_1768
ATP-dependent DNA helicase, UvrD/REP family.
  
     0.562
BDP_1331
Narrowly conserved hypothetical protein.
  
     0.547
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.