Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BDP_0236Beta-xylosidase or endo-arabinase; Belongs to the glycosyl hydrolase 43 family. (514 aa)    
Predicted Functional Partners:
BDP_0237
Beta-xylosidase or endo-arabinofuranosidase.
 
   
 0.912
BDP_2148
Cellulase.
 
   
 0.876
BDP_0239
exo-alpha-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.841
BDP_2127
Cellobiose phosphorylase.
  
   
 0.700
BDP_2152
Alpha-L-fucosidase.
  
   
 0.687
BDP_2147
Endoglucanase family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
   
 0.662
BDP_0123
Acetyl esterase.
 
   
 0.661
BDP_2092
Alpha-galactosidase.
 
   
 0.632
BDP_0131
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 43 family.
  
     0.590
BDP_2091
Alpha-arabinofuranosidase I.
 
  
 0.571
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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