STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BDP_0239exo-alpha-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family. (340 aa)    
Predicted Functional Partners:
BDP_2094
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 43 family.
   
 0.842
BDP_0236
Beta-xylosidase or endo-arabinase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.841
BDP_0243
Endo-1,4-beta-xylanase.
   
 0.838
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
  
 0.775
BDP_2091
Alpha-arabinofuranosidase I.
   
 0.712
bbgIII
Beta-galactosidase BbgIII.
     
 0.632
birA
Biotin--acetyl-CoA-carboxylase ligase BirA.
      
 0.618
fucO
fucO Lactaldehyde reductase.
      
 0.618
maa
Maa Maltose O-acetyltransferase.
      
 0.618
ispF
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).
      
 0.618
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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