BDP_0255 protein (Bifidobacterium dentium) - STRING interaction network

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second shell of interactors

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Predicted Interactions

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Score

BDP_0255

Conserved hypothetical protein. (185 aa)

Predicted Functional Partners:

rpmA

0.997

rplS

0.991

rplO

0.986

rpmF

0.983

rplQ

0.968

rpsI

0.967

rpsP

0.966

rplC

0.966

rpsF

0.965

rncS

0.961

Your Current Organism:

Bifidobacterium dentium

NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDP_0255	rncS	BDP_0255	BDP_0320	Conserved hypothetical protein.	rncS Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.961
BDP_0255	rplC	BDP_0255	BDP_0430	Conserved hypothetical protein.	rplC 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.966
BDP_0255	rplO	BDP_0255	BDP_0450	Conserved hypothetical protein.	rplO 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.986
BDP_0255	rplQ	BDP_0255	BDP_0458	Conserved hypothetical protein.	rplQ 50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.968
BDP_0255	rplS	BDP_0255	BDP_0336	Conserved hypothetical protein.	rplS LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.991
BDP_0255	rpmA	BDP_0255	BDP_0346	Conserved hypothetical protein.	rpmA LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.	0.997
BDP_0255	rpmF	BDP_0255	BDP_0321	Conserved hypothetical protein.	rpmF LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.983
BDP_0255	rpsF	BDP_0255	BDP_2022	Conserved hypothetical protein.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.965
BDP_0255	rpsI	BDP_0255	BDP_0420	Conserved hypothetical protein.	rpsI 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.967
BDP_0255	rpsP	BDP_0255	BDP_0312	Conserved hypothetical protein.	rpsP SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.966
rncS	BDP_0255	BDP_0320	BDP_0255	rncS Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Conserved hypothetical protein.	0.961
rncS	rplC	BDP_0320	BDP_0430	rncS Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	rplC 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.952
rncS	rplO	BDP_0320	BDP_0450	rncS Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	rplO 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.970
rncS	rplQ	BDP_0320	BDP_0458	rncS Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	rplQ 50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.975
rncS	rplS	BDP_0320	BDP_0336	rncS Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	rplS LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.993
rncS	rpmA	BDP_0320	BDP_0346	rncS Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	rpmA LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.	0.981
rncS	rpmF	BDP_0320	BDP_0321	rncS Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	rpmF LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.991
rncS	rpsF	BDP_0320	BDP_2022	rncS Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.974
rncS	rpsI	BDP_0320	BDP_0420	rncS Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	rpsI 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.978
rncS	rpsP	BDP_0320	BDP_0312	rncS Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	rpsP SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.978