STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0259Hypothetical membrane-spanning protein. (178 aa)    
Predicted Functional Partners:
BDP_1331
Narrowly conserved hypothetical protein.
 
    0.721
BDP_0258
MIFH/DOPD protein family.
       0.716
BDP_1332
Narrowly conserved hypothetical membrane spanning protein.
 
  
 0.672
BDP_0356
Conserved hypothetical membrane spanning protein.
 
     0.667
BDP_1208
Hypothetical secreted protein.
  
     0.632
BDP_0199
GLXTG motif protein.
  
     0.541
BDP_0266
Conserved hypothetical protein.
 
     0.526
BDP_1589
Chromosome segregation ATPase.
  
     0.509
BDP_0995
Conserved hypothetical protein.
  
     0.500
BDP_2268
Conserved hypothetical secreted protein.
  
     0.500
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.