STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0281Conserved hypothetical protein. (306 aa)    
Predicted Functional Partners:
gpsA
gpsA Glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
     
 0.714
cdsA
CdsA Phosphatidate cytidylyltransferase.
 
  
 0.691
BDP_1589
Chromosome segregation ATPase.
 
     0.687
BDP_0356
Conserved hypothetical membrane spanning protein.
  
     0.672
ddlA
ddlA D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
       0.626
BDP_1331
Narrowly conserved hypothetical protein.
 
   
 0.602
plsC2
plsC2 1-acyl-sn-glycerol-3-phosphate acyltransferase.
  
     0.600
BDP_1987
Acetyltransferase (GNAT) family.
 
   
 0.573
BDP_0266
Conserved hypothetical protein.
  
     0.568
BDP_1768
ATP-dependent DNA helicase, UvrD/REP family.
 
   0.558
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.