Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0281Conserved hypothetical protein. (306 aa)    
Predicted Functional Partners:
BDP_1589
Chromosome segregation ATPase.
 
     0.686
gpsA
gpsA Glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
     
 0.682
BDP_0356
Conserved hypothetical membrane spanning protein.
  
     0.672
cdsA
CdsA Phosphatidate cytidylyltransferase.
 
  
 0.635
plsC2
plsC2 1-acyl-sn-glycerol-3-phosphate acyltransferase.
  
     0.600
BDP_1331
Narrowly conserved hypothetical protein.
 
   
 0.588
ddlA
ddlA D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
       0.587
BDP_1987
Acetyltransferase (GNAT) family.
 
   
 0.572
BDP_0266
Conserved hypothetical protein.
  
     0.568
BDP_1768
ATP-dependent DNA helicase, UvrD/REP family.
 
   0.557
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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