Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0286Permease protein of ABC transporter system. (300 aa)    
Predicted Functional Partners:
BDP_0287
ATP-binding protein of ABC transporter system; Belongs to the ABC transporter superfamily.
 
 0.997
BDP_0284
Solute binding protein of ABC transporter system.
 
  
 0.995
BDP_0285
Permease protein of ABC transporter system.
 
 
 0.995
BDP_2137
ABC transporter binding protein.
 
 0.990
BDP_2136
Binding-protein-dependent transport systems inner membrane component.
  
 0.977
BDP_2138
ATP-binding protein of ABC transporter system; Belongs to the ABC transporter superfamily.
  
 0.973
BDP_2134
ABC transporter permease protein.
  
  
  0.911
BDP_2135
ABC transporter permease.
 
 
 0.819
BDP_0288
Conserved hypothetical membrane spanning protein.
       0.683
ddlA
ddlA D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
     
 0.557
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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