STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0293Transcriptional regulator, TetR family. (217 aa)    
Predicted Functional Partners:
BDP_0144
Fimbrial subunit.
  
     0.732
BDP_0977
Conserved hypothetical protein.
  
     0.690
BDP_0294
Aminotransferase.
 
     0.680
BDP_0181
Hypothetical membrane-spanning protein.
  
     0.678
BDP_1615
Hydrolases of the alpha/beta superfamily.
  
     0.666
crcB
crcB-like protein, campher resistance; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
  
     0.653
BDP_0724
Conserved hypothetical protein.
  
     0.652
BDP_0292
Conserved hypothetical protein.
       0.651
BDP_1439
ABC-type multidrug transport system permease.
 
     0.629
BDP_1779
FHA domain-containing protein.
  
     0.610
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.