STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0300Alpha/beta fold family hydrolase membrane associated protein. (480 aa)    
Predicted Functional Partners:
BDP_1047
Long-chain-fatty acid CoA ligase.
   
 
 0.815
fadH3
fadD3 Long-chain-fatty-acid--CoA ligase.
   
 
 0.815
fadD1
fadD1 Long-chain-fatty-acid--CoA ligase.
   
 
 0.815
fadD
long-chain-fatty-acid--CoA ligase.
   
 
 0.815
BDP_0301
Hypothetical protein.
       0.554
rplC
rplC 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
   0.415
BDP_0196
ABC1 family protein kinase.
   
   0.411
rplL
rplL LSU ribosomal protein L12P (L7/L12); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
   
   0.406
rpmB
rpmB LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.402
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.