STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0300Alpha/beta fold family hydrolase membrane associated protein. (480 aa)    
Predicted Functional Partners:
BDP_0728
Glycosyltransferase.
    
 0.909
BDP_1047
Long-chain-fatty acid CoA ligase.
   
 
 0.815
fadH3
fadD3 Long-chain-fatty-acid--CoA ligase.
   
 
 0.815
fadD1
fadD1 Long-chain-fatty-acid--CoA ligase.
   
 
 0.815
fadD
long-chain-fatty-acid--CoA ligase.
   
 
 0.815
rpmA
rpmA LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.
   
   0.558
rplL
rplL LSU ribosomal protein L12P (L7/L12); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
  
   0.558
BDP_0301
Hypothetical protein.
       0.555
rpmB
rpmB LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.549
rpsP
rpsP SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.
    
   0.543
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.