rpmB protein (Bifidobacterium dentium) - STRING interaction network

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Score

rpmB

rpmB LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. (64 aa)

Predicted Functional Partners:

rpsR

0.985

rpmG

0.984

rplS

0.982

rplC

0.981

rpmE2

0.981

rpmH

0.981

rpmF

0.980

rpmA

0.980

rplM

0.980

rplV

0.979

Your Current Organism:

Bifidobacterium dentium

NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplC	rplM	BDP_0430	BDP_0419	rplC 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	rplM 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.998
rplC	rplS	BDP_0430	BDP_0336	rplC 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	rplS LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.993
rplC	rplV	BDP_0430	BDP_0436	rplC 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	rplV 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.999
rplC	rpmA	BDP_0430	BDP_0346	rplC 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	rpmA LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.	0.996
rplC	rpmB	BDP_0430	BDP_0304	rplC 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	rpmB LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.	0.981
rplC	rpmE2	BDP_0430	BDP_0602	rplC 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	rpmE2 LSU ribosomal protein L31P; Binds the 23S rRNA.	0.950
rplC	rpmF	BDP_0430	BDP_0321	rplC 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	rpmF LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.971
rplC	rpmG	BDP_0430	BDP_0407	rplC 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	rpmG LSU ribosomal protein L33P; Belongs to the bacterial ribosomal protein bL33 family.	0.982
rplC	rpmH	BDP_0430	BDP_2278	rplC 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	RpmH LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.	0.963
rplC	rpsR	BDP_0430	BDP_2020	rplC 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.994
rplM	rplC	BDP_0419	BDP_0430	rplM 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	rplC 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.998
rplM	rplS	BDP_0419	BDP_0336	rplM 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	rplS LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.996
rplM	rplV	BDP_0419	BDP_0436	rplM 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	rplV 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.996
rplM	rpmA	BDP_0419	BDP_0346	rplM 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	rpmA LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.	0.997
rplM	rpmB	BDP_0419	BDP_0304	rplM 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	rpmB LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.	0.980
rplM	rpmE2	BDP_0419	BDP_0602	rplM 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	rpmE2 LSU ribosomal protein L31P; Binds the 23S rRNA.	0.971
rplM	rpmF	BDP_0419	BDP_0321	rplM 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	rpmF LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.990
rplM	rpmG	BDP_0419	BDP_0407	rplM 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	rpmG LSU ribosomal protein L33P; Belongs to the bacterial ribosomal protein bL33 family.	0.980
rplM	rpmH	BDP_0419	BDP_2278	rplM 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	RpmH LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.	0.981
rplM	rpsR	BDP_0419	BDP_2020	rplM 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.991