| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BDP_0305 | BDP_0306 | BDP_0305 | BDP_0306 | RecG-like helicase. | Methyltransferase. | 0.846 |
| BDP_0305 | murB | BDP_0305 | BDP_0408 | RecG-like helicase. | murB UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. | 0.498 |
| BDP_0305 | murF | BDP_0305 | BDP_1546 | RecG-like helicase. | murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.519 |
| BDP_0305 | polA-2 | BDP_0305 | BDP_0991 | RecG-like helicase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.589 |
| BDP_0305 | recA | BDP_0305 | BDP_1421 | RecG-like helicase. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.713 |
| BDP_0305 | recF | BDP_0305 | BDP_0003 | RecG-like helicase. | Recombinational DNA repair ATPase RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | 0.501 |
| BDP_0305 | rpmB | BDP_0305 | BDP_0304 | RecG-like helicase. | rpmB LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. | 0.705 |
| BDP_0305 | ruvA | BDP_0305 | BDP_1176 | RecG-like helicase. | Holliday junction DNA helicase ruvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.581 |
| BDP_0305 | topA | BDP_0305 | BDP_0249 | RecG-like helicase. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.639 |
| BDP_0305 | uvrA | BDP_0305 | BDP_1131 | RecG-like helicase. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.556 |
| BDP_0306 | BDP_0305 | BDP_0306 | BDP_0305 | Methyltransferase. | RecG-like helicase. | 0.846 |
| BDP_0306 | rpmB | BDP_0306 | BDP_0304 | Methyltransferase. | rpmB LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. | 0.695 |
| murB | BDP_0305 | BDP_0408 | BDP_0305 | murB UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. | RecG-like helicase. | 0.498 |
| murB | murF | BDP_0408 | BDP_1546 | murB UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. | murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.869 |
| murB | topA | BDP_0408 | BDP_0249 | murB UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.486 |
| murF | BDP_0305 | BDP_1546 | BDP_0305 | murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | RecG-like helicase. | 0.519 |
| murF | murB | BDP_1546 | BDP_0408 | murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | murB UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. | 0.869 |
| polA-2 | BDP_0305 | BDP_0991 | BDP_0305 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | RecG-like helicase. | 0.589 |
| polA-2 | recA | BDP_0991 | BDP_1421 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.842 |
| polA-2 | ruvA | BDP_0991 | BDP_1176 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | Holliday junction DNA helicase ruvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.404 |