STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0309Aspartate ammonia-lyase. (494 aa)    
Predicted Functional Partners:
BDP_0059
L-asparaginase.
  
 
 0.955
gadB
GadB glutamate decarboxylase; Belongs to the group II decarboxylase family.
     
 0.924
BDP_1524
Aspartate racemase; Belongs to the aspartate/glutamate racemases family.
    
 0.910
purB
purB Adenylosuccinate lyase.
     
 0.906
sdhA
SdhA Succinate dehydrogenase flavoprotein subunit.
  
 0.906
argH
argH Argininosuccinate lyase.
     
 0.906
purA
Adenylsuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
     
 0.905
BDP_0294
Aminotransferase.
    
 0.904
aspC
aspC Aspartate aminotransferase.
    
 0.904
purF-2
purF Amidophosphoribosyltransferase.
     
 0.904
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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