node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BDP_0311 | jag | BDP_0311 | BDP_2275 | Conserved hypothetical protein; Belongs to the UPF0109 family. | Jag protein. | 0.933 |
BDP_0311 | rbsD | BDP_0311 | BDP_1016 | Conserved hypothetical protein; Belongs to the UPF0109 family. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.691 |
BDP_0311 | rimM | BDP_0311 | BDP_0310 | Conserved hypothetical protein; Belongs to the UPF0109 family. | rimM 16S rRNA processing protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.913 |
BDP_0311 | rplS | BDP_0311 | BDP_0336 | Conserved hypothetical protein; Belongs to the UPF0109 family. | rplS LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.737 |
BDP_0311 | rplT | BDP_0311 | BDP_1509 | Conserved hypothetical protein; Belongs to the UPF0109 family. | rplT LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.689 |
BDP_0311 | rpmF | BDP_0311 | BDP_0321 | Conserved hypothetical protein; Belongs to the UPF0109 family. | rpmF LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. | 0.678 |
BDP_0311 | rpsI | BDP_0311 | BDP_0420 | Conserved hypothetical protein; Belongs to the UPF0109 family. | rpsI 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.685 |
BDP_0311 | rpsO | BDP_0311 | BDP_0366 | Conserved hypothetical protein; Belongs to the UPF0109 family. | rpsO SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.691 |
BDP_0311 | rpsP | BDP_0311 | BDP_0312 | Conserved hypothetical protein; Belongs to the UPF0109 family. | rpsP SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family. | 0.989 |
BDP_0311 | rpsR | BDP_0311 | BDP_2020 | Conserved hypothetical protein; Belongs to the UPF0109 family. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.677 |
jag | BDP_0311 | BDP_2275 | BDP_0311 | Jag protein. | Conserved hypothetical protein; Belongs to the UPF0109 family. | 0.933 |
rbsD | BDP_0311 | BDP_1016 | BDP_0311 | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | Conserved hypothetical protein; Belongs to the UPF0109 family. | 0.691 |
rbsD | rimM | BDP_1016 | BDP_0310 | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | rimM 16S rRNA processing protein; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.825 |
rbsD | rplS | BDP_1016 | BDP_0336 | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | rplS LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.999 |
rbsD | rplT | BDP_1016 | BDP_1509 | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | rplT LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
rbsD | rpmF | BDP_1016 | BDP_0321 | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | rpmF LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. | 0.999 |
rbsD | rpsI | BDP_1016 | BDP_0420 | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | rpsI 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
rbsD | rpsO | BDP_1016 | BDP_0366 | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | rpsO SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
rbsD | rpsP | BDP_1016 | BDP_0312 | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | rpsP SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
rbsD | rpsR | BDP_1016 | BDP_2020 | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.999 |