rncS protein (Bifidobacterium dentium) - STRING interaction network

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rncS

rncS Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (294 aa)

Predicted Functional Partners:

rpmF

0.918

rpsO

0.881

rpmA

0.849

rpsB

0.844

rplS

0.837

rpsI

0.831

rpsP

0.830

rplD

0.830

rplQ

0.830

rpsL

0.826

Your Current Organism:

Bifidobacterium dentium

NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rncS	rplD	BDP_0320	BDP_0431	rncS Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	rplD 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.830
rncS	rplQ	BDP_0320	BDP_0458	rncS Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	rplQ 50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.830
rncS	rplS	BDP_0320	BDP_0336	rncS Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	rplS LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.837
rncS	rpmA	BDP_0320	BDP_0346	rncS Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	rpmA LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.	0.849
rncS	rpmF	BDP_0320	BDP_0321	rncS Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	rpmF LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.918
rncS	rpsB	BDP_0320	BDP_1202	rncS Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	rpsB SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	0.844
rncS	rpsI	BDP_0320	BDP_0420	rncS Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	rpsI 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.831
rncS	rpsL	BDP_0320	BDP_0731	rncS Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	rpsL SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.826
rncS	rpsO	BDP_0320	BDP_0366	rncS Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	rpsO SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.881
rncS	rpsP	BDP_0320	BDP_0312	rncS Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	rpsP SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.830
rplD	rncS	BDP_0431	BDP_0320	rplD 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	rncS Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.830
rplD	rplQ	BDP_0431	BDP_0458	rplD 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	rplQ 50S ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.997
rplD	rplS	BDP_0431	BDP_0336	rplD 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	rplS LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.996
rplD	rpmA	BDP_0431	BDP_0346	rplD 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	rpmA LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.	0.993
rplD	rpmF	BDP_0431	BDP_0321	rplD 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	rpmF LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.971
rplD	rpsB	BDP_0431	BDP_1202	rplD 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	rpsB SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	0.998
rplD	rpsI	BDP_0431	BDP_0420	rplD 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	rpsI 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.996
rplD	rpsL	BDP_0431	BDP_0731	rplD 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	rpsL SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.999
rplD	rpsO	BDP_0431	BDP_0366	rplD 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	rpsO SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.995
rplD	rpsP	BDP_0431	BDP_0312	rplD 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	rpsP SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.992

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