STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0339ATP-binding protein of ABC transporter system. (281 aa)    
Predicted Functional Partners:
BDP_0340
ATP-binding protein of ABC transporter system.
 
  
 0.900
BDP_2016
ATP-binding protein of ABC transporter system.
  
     0.699
BDP_0817
Permease protein of ABC transporter system.
 
 
 0.670
BDP_0711
Permease protein of ABC transporter system.
 
 
 0.646
BDP_1496
Permease protein of ABC transporter system.
 
   0.526
BDP_0338
Putative ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
  
 0.513
BDP_0167
ABC-type transporter, permease component.
 
   0.506
pheS
pheS Phenylalanyl-tRNA synthetase alpha chain; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
 
 
   0.506
BDP_0337
lepB Signal peptidase I; Belongs to the peptidase S26 family.
       0.465
gpc
Gcp O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
 
    0.463
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
Server load: low (24%) [HD]