rne protein (Bifidobacterium dentium) - STRING interaction network

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Score

rne

Rne Ribonuclease G. (926 aa)

Predicted Functional Partners:

pnp

0.920

BDP_0839

0.778

eno

0.754

jag

0.712

BDP_1134

0.706

rph

0.697

rplU

0.673

BDP_0311

0.666

dapE

0.594

rnpA

0.566

Your Current Organism:

Bifidobacterium dentium

NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDP_0311	jag	BDP_0311	BDP_2275	Conserved hypothetical protein; Belongs to the UPF0109 family.	Jag protein.	0.930
BDP_0311	rne	BDP_0311	BDP_0344	Conserved hypothetical protein; Belongs to the UPF0109 family.	Rne Ribonuclease G.	0.666
BDP_0839	eno	BDP_0839	BDP_0870	ATP-dependent RNA helicase.	Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.	0.546
BDP_0839	pnp	BDP_0839	BDP_0367	ATP-dependent RNA helicase.	Pnp Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.905
BDP_0839	rne	BDP_0839	BDP_0344	ATP-dependent RNA helicase.	Rne Ribonuclease G.	0.778
BDP_0839	rph	BDP_0839	BDP_0329	ATP-dependent RNA helicase.	Rph Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.588
BDP_0839	rplU	BDP_0839	BDP_0345	ATP-dependent RNA helicase.	rplU LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.689
BDP_1134	rne	BDP_1134	BDP_0344	Conserved hypothetical protein; Displays ATPase and GTPase activities.	Rne Ribonuclease G.	0.706
dapE	rne	BDP_0343	BDP_0344	dapE Succinyl-diaminopimelate desuccinylase.	Rne Ribonuclease G.	0.594
dapE	rplU	BDP_0343	BDP_0345	dapE Succinyl-diaminopimelate desuccinylase.	rplU LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.438
eno	BDP_0839	BDP_0870	BDP_0839	Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.	ATP-dependent RNA helicase.	0.546
eno	pnp	BDP_0870	BDP_0367	Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.	Pnp Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.688
eno	rne	BDP_0870	BDP_0344	Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.	Rne Ribonuclease G.	0.754
jag	BDP_0311	BDP_2275	BDP_0311	Jag protein.	Conserved hypothetical protein; Belongs to the UPF0109 family.	0.930
jag	rne	BDP_2275	BDP_0344	Jag protein.	Rne Ribonuclease G.	0.712
jag	rnpA	BDP_2275	BDP_2277	Jag protein.	RnpA Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.	0.707
pnp	BDP_0839	BDP_0367	BDP_0839	Pnp Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	ATP-dependent RNA helicase.	0.905
pnp	eno	BDP_0367	BDP_0870	Pnp Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.	0.688
pnp	rne	BDP_0367	BDP_0344	Pnp Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	Rne Ribonuclease G.	0.920
pnp	rph	BDP_0367	BDP_0329	Pnp Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	Rph Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.432